Yuanhao Guo

Research Interests

Computer vision and machine learning applications

Computational biology

Microscope image segmentation, 3D reconstruction and shape alignment

Deep learning in taxonomy

Teaching & Supervision

Teaching assistant Image Processing in Microscope, 2015 & 2016, LIACS, Leiden University.

Co-supervision in master thesis: Yunpeng Zhang, master student in Computer Science, LIACS, Leiden University.

Co-supervision in bachelor project: Mengke Li, exchange student in Beijing Institute of Technology.

Cooperations

Dr. Wouter Veneman , CML, Leiden University.

Dr. Rutger Vos , Naturalis Biodiversity Center.

Msc. Rob van Wijk , LACDR, Leiden University.

Publications & Reports

Multi-modal 3D reconstruction and measurements of zebrafish larvae and its organs using axial-view microscopy. Yuanhao Guo, Rob van Wijk, Elke Krekels, Herman P. Spaink, Piet Hein van der Graaf and Fons J. Verbeek. In EEE Conference on Image Processing. 2017.

A Two-phase 3D reconstruction approach for light microscopy axial-view imaging. Yuanhao Guo, Yunpeng Zhang and Fons Verbeek. Revisited to Journal of Selected Topics in Signal Processing. (2017).

3D reconstruction and measurements of zebrafish larvae from High-throughput axial-view in vivo imaging. Yuanhao Guo, Wouter J. Veneman, Herman P. Spaink, and Fons J. Verbeek. Biomedical Optics Express. 8(5), pp.2611-2634 (2017). link

Silhouette-based 3D model for zebrafish high-throughput imaging. Yuanhao Guo, Wouter J. Veneman, Herman P. Spaink, and Fons J. Verbeek. In IEEE Conference on Image Processing Theory, Tools and Applications. pp. 403-408. 2015.pdf

Graph-based Kinship Recognition. Yuanhao Guo, Hamdi Dibeklioglu, Laurens van der Maaten. In IEEE Conference on Pattern Recognition. pp. 4287-4292. 2014. pdf

Database & Demos

DataBases

1. UB KinFace Database (Redirect to original website)

2. KFW Kinship Face Database (Redirect to original website)

3. Group_Siblings_Faces_Database (Redirect to download page)

4. Axial-view larval staged zebrafish in the bright field microscope imaging (Please contact the authors)

Demos

1. Hybrid method for zebrafish segmentation: (a) demo   (b) methodology

2. Profile-based 3D reconstruction of zebrafish larvae: (a) 3 dpf   (b) 4 dpf   (c) 5 dpf

3. Multi-model 3D reconstruction for zebrafish larvae and its organs: (a) liver   (b) cartilage.

4. A Two-phase 3D reconstruction approach for light microscopy axial-view imaging: demo