Kai Ye, Walter A. Kosters and Adriaan P. IJzerman

An eficient, versatile and scalable pattern growth approach
to mine frequent patterns in unaligned protein sequences

Pseudocode for the algorithms in the paper is here; C++-code can be found below.

Six algorithms

• PGOneI
• PGOneII
• PGOneIII
• PGTwoI
• PGTwoII
• PGTwoIII

Questions/remarks: kosters@liacs.nl.

Leiden University, 9 October 2006 — http://www.liacs.nl/home/kosters/pg/index.html