Dr. Erwin M. Bakker

co-Director LIACS Media Lab
Leiden Institute for Advanced Computer Science

Leiden University, Niels Bohrweg 1

Phone: +31 (0)6 81 553 284

http://www.liacs.nl/~erwin

Education

• Robotics
• Seminar Audio Processing and Indexing
• Multimedia Systems
• BioEthics and Security

• Computer Science track Bioinformatics (-2018 Program Director)
  
• Computational Molecular Biology (-2019)
• Seminar ACA: Toward Commodity High Performance DBMS's (-2010)
•  Databases and Data Mining (-2018)
• Tutor Statistics (-2018)
  
• Tutor Computer Science (-2014)
  

PhD Projects (subjects)

• Audio Indexing
• Optimizing Compilers
• Deep Neural Networks

• Recent Publications

Research Projects

• VIRSI
• CMSB 2
• DIAL CMSB 1
• CYTTRON
• Data Integration & Data Mining

In the past, I have been involved in many international and national research projects: ALCOM, ALTEC, ParTool, Prepare, MMIPPS, BTS-project Data-Integration & Data Mining, DIAL (Integration, Analysis and Logistics) of the Centre for Medical Systems Biology (CMSB) funded by the Netherlands Genomics Initiative, Cyttron Bio-Computing Search Project funded by Bsik, VIRSI, and CMSB2.

Organizing Committee Memberships

·        Publications Co-Chair of the 2^nd International Conference on Image and Video Retrieval, 2003.

·        Publications Co-Chair of the 4th International Conference on Image and Video Retrieval, 2005.

·        Program Chair, IEEE International Workshop on Human Computer Interaction, 2007.

·        Program Chair, ACM International Conference on Multimedia Information Retrieval, 2008.

Program Committee Memberships

·        2^nd International Conference on Image and Video Retrieval, 2003.

·        3^rd International Conference on Image and Video Retrieval, 2004.

·        6^th ACM SIGMM International Workshop on Multimedia Information Retrieval, 2004.

·        4th International Conference on Image and Video Retrieval, 2005.

·        10th IASTED Int. Conference on Internet and Multimedia Systems and Applications, 2006.

·        International Conference on Wireless and Optical Communications, 2007.

·        12^th IASTED Int. Conference on Internet and Multimedia Systems and Applications, 2008.

·        International Conference on Wireless and Optical Communications, 2009.

·        13^th IASTED Int. Conference on Internet and Multimedia Systems and Applications, 2009.

Invited Talks

·        Data Mining in Bio-informatics, DAS3 Opening Symposium, Delft Univ.of Tech., 2007.

·        Data Bases and Data Mining Lecture series, Master in Bioinformatics, Univ.of Siena, 2007.

Recent Publications

J.T.M. van Schie, E.M. Bakker, A.M. Jonker, P.R. van Weeren, Computerized ultrasonographic tissue characterization of equine superficial digital flexor tendons by means of stability quantification of echo patterns in contiguous transverse ultrasonographic images. Am. J. Vet. Res. 64, 366-375, 2003.

N. Sebe, Y. Sun, E.M. Bakker, M. Lew, I. Cohen, T. Huang. Towards Authentic Emotion Recognition. In proceedings of 2004 IEEE International Conference on Systems, Man & Cybernetics.

E.M. Bakker, H.L. Bodlaender, R.B. Tan, J. van leeuwen, "Interval Routing and Minor Monotone Graph Parameters.", RUU Technical Report (UU-CS-2006-001), 2006.

Michael Lew, Erwin M. Bakker, Mark Huiskes, Bart Thomee, Floris Sicking, Visual Information Retrieval Using Synthetic Imagery, BRICKS symposium, March 13^th 2007.

Michael Lew, Erwin M. Bakker, Nicu Sebe, and Thomas Huang, Human Computer Intelligent Interaction: A Survey, HCI 2007, pp 1-5, 2007.

Bart Thomee, Mark J. Huiskes, Erwin M. Bakker, and Michael Lew, An Artificial Imagination for Interactive Search, HCI 2007, LNCS 4796, Springer, pp 19-28, 2007.

Sven Groot, Harmen L. A. van der Spek, Erwin M. Bakker, Harry A. G. Wijshoff, The Automatic Transformation of Linked List Data Structures, PACT '07: Proceedings of the 16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007), September 2007.

Bart Thomee, Mark J. Huiskes, Erwin Bakker, Michael S. Lew, Visual information retrieval using synthesized imagery, CIVR '07: Proceedings of the 6th ACM international conference on Image and video retrieval, July 2007.              

Feiyang Yu, Ard Oerlemans,Erwin M. Bakker and Michael S. Lew, Automatic Registration of Microtubule Images, Proceeding of ASCI 2007, the Netherlands, 2007.

H.L.A. van der Spek, E.M. Bakker, and H.A.G. Wijshoff, A Compile/Run-Time Environment for the Automatic Transformation of Linked List Data Structures, International Journal of Parallel Programming, Vol. 36, No. 6, pp. 592-623, December 2008.

H.L.A. van der Spek, E.M. Bakker, and H.A.G. Wijshoff, SPARK00: A Benchmark Package for the Compiler Evaluation of Irregular/Sparse Codes, in ASCI 2008: Fourteenth Annual Conference of the Advanced School for Computing and Imaging, 2008.

B. Thomee, M.J. Huiskes, E.M. Bakker, M.S. Lew, Using an Artificial Imagination for Content-Based Image Retrieval, in ASCI 2008: Fourteenth Annual Conference of the Advanced School for Computing and Imaging, 2008.

B. Thomee, E.M. Bakker, M.J. Huiskes, M.S. Lew, Large Scale Image Copy Detection Evaluation, In: MIR 2008, ACM International Conference on Multimedia Information Retrieval, October 2008.

B. Thomee, M.J. Huiskes, E.M. Bakker, M.S. Lew, Using an Artificial Imagination for Texture Retrieval, In ICPR 2008, 19^th International Conference on Pattern Recognition, December 2008.

H.T.M. van Schie, E.M. Bakker, W. Cherdchutham, A.M. Jonker, C.H.A. van de Lest, P.R. van Weeren, Monitoring of the repair process of surgically created lesions in equine superficial digital flexor tendons by use of computerized ultrasonography,AJVR, Vol 70, No. 1, January 2009.

H T M van Schie, R J de Vos, S de Jonge, E M Bakker, M P Heijboer, J A N Verhaar, J L Tol and H Weinans, Ultrasonographic tissue characterisation of human Achilles tendons: quantification of tendon structure through a novel non-invasive approach, Br. J. Sports Med., August, 2009.